Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4L1S

Covalent modification of transthyretin K15 by yielding the fluorescent conjugate (E)-3-(dimethylamino)-5-(4-hydroxy-3,5-dimethylstyryl)benzamide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]200
Detector technologyPIXEL
Collection date2012-08-02
DetectorPSI PILATUS 6M
Wavelength(s)0.9797
Spacegroup nameP 21 21 2
Unit cell lengths41.632, 86.059, 62.802
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.480 - 1.500
R-factor0.1615
Rwork0.160
R-free0.18520
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2fbr
RMSD bond length0.014
RMSD bond angle1.592
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.4801.580
High resolution limit [Å]1.5001.500
Number of reflections36103
<I/σ(I)>18.65.9
Completeness [%]98.595.7
Redundancy6.15.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.5298The wt-TTR was concentrated to 4 mg/ml in 10 mM NaPi, 100 mM KCl, at pH 7.6 and co-crystallized at room temperature with inhibitors using the vapor-diffusion sitting drop method, crystals were grown from 1.395 M sodium citrate, 3.5% v/v glycerol at ph 5.5. The crystals were frozen using a cryo-protectant solution of 1.395 m sodium citrate, ph 5.5, containing 10% v/v glycerol, vapor diffusion, sitting drop, temperature 298.0, VAPOR DIFFUSION, SITTING DROP

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon