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4KPH

Structure of the Fab fragment of N62, a protective monoclonal antibody to the nonreducing end of Francisella tularensis O-antigen

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU300
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2012-05-18
DetectorRIGAKU RAXIS IV
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths68.874, 87.076, 153.589
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution14.870 - 2.590
R-factor0.225
Rwork0.222
R-free0.26800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3OZ9 (light chain) and pdb entry 3D9A (heavy chain)
RMSD bond length0.002
RMSD bond angle0.666
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER (2.5.0)
Refinement softwarePHENIX (1.8_1069)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]15.00015.0002.690
High resolution limit [Å]2.5935.5202.600
Rmerge0.0680.0330.325
Number of reflections28828
<I/σ(I)>14.6
Completeness [%]98.897.698.1
Redundancy3.83.73.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5290Microseeding by mixing 0.5 ul of Fab (12 mg/ml in 20 mM Tris-HCl pH 7.5, 150 mM NaCl, 0.02% NaN3) with 0.5 ul of reservoir solution [0.1 M bistris (pH 6.5), 0.2 M ammonium acetate, 25% w/v PEG 3350] and streaking after equilibration, VAPOR DIFFUSION, HANGING DROP, temperature 290K

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