4KMB
COMPLEX OF 4'-SULFO-LEWIS-X WITH A SELECTIN-LIKE MUTANT OF MANNOSE-BINDING PROTEIN A
Experimental procedure
Source type | ROTATING ANODE |
Source details | RIGAKU RUH2R |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1996-05-28 |
Detector | RIGAKU RAXIS IIC |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 79.100, 85.000, 97.500 |
Unit cell angles | 90.00, 106.30, 90.00 |
Refinement procedure
Resolution | 10.000 - 2.000 |
R-factor | 0.208 |
Rwork | 0.208 |
R-free | 0.27200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1rtm |
RMSD bond length | 0.007 |
RMSD bond angle | 22.100 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR |
Refinement software | X-PLOR (3.54) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.048 | 0.242 |
Number of reflections | 34603 | |
<I/σ(I)> | 12.2 | 4.7 |
Completeness [%] | 97.5 | 94.7 |
Redundancy | 2.2 | 2.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 7.8 | 22 * | PROTEIN WAS CRYSTALLIZED FROM 8-10% PEG 8000, 2% PEG 1000, 100 MM TRIS-CL, PH 7.8, 200 MM NACL, 20 MM CACL2, 2 MM NAN3. PRIOR TO DATA COLLECTION, THE CRYSTAL WAS ADAPTED TO THE MOTHER LIQUOR MINUS PEG 8000, PLUS 35% PEG 400, PLUS 80 MM 4'-SULFO- LEWIS-X. |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 2 (mg/ml) | |
10 | 1 | drop | solution A | ||
2 | 1 | drop | 50 (mM) | ||
3 | 1 | drop | 5 (mM) | ||
4 | 1 | reservoir | PEG8000 | 8-10 (%(w/v)) | solution A |
5 | 1 | reservoir | PEG1000 | 2 (%) | solution A |
6 | 1 | reservoir | Tris-HCl | 100 (mM) | solution A |
7 | 1 | reservoir | 200 (mM) | solution A | |
8 | 1 | reservoir | 2 (mM) | solution A | |
9 | 1 | reservoir | 20 (mM) | solution A |