4KA8
Structure of Organellar OligoPeptidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-11-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.817, 101.339, 132.908 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.390 - 1.900 |
R-factor | 0.1927 |
Rwork | 0.191 |
R-free | 0.21810 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.366 |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER (2.5.1) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 80.586 | 47.346 | 2.000 |
High resolution limit [Å] | 1.806 | 6.010 | 1.900 |
Rmerge | 0.022 | 0.435 | |
Rmeas | 0.027 | 0.528 | |
Rpim | 0.014 | 0.293 | |
Total number of observations | 8151 | 34244 | |
Number of reflections | 76412 | ||
<I/σ(I)> | 12.5 | 30.6 | 2.2 |
Completeness [%] | 99.2 | 97.6 | 98.6 |
Redundancy | 3.3 | 3.2 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 20% PEG 5000 MME, 0.1M Bis-Tris-Propane, 0.2M Na-malonate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K |