Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4K9Z

Crystal structure of a putative thiol-disulfide oxidoreductase from Bacteroides vulgatus (target NYSGRC-011676), space group P6222

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]100
Detector technologyCCD
Collection date2012-10-17
DetectorADSC QUANTUM 315r
Wavelength(s)0.9793
Spacegroup nameP 62 2 2
Unit cell lengths60.960, 60.960, 173.890
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution9.977 - 1.800
R-factor0.2023
Rwork0.200
R-free0.24730
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2lja
RMSD bond length0.007
RMSD bond angle1.206
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.20)
Phasing softwareAMoRE
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]57.96334.7781.900
High resolution limit [Å]1.8005.6901.800
Rmerge0.0760.0260.721
Total number of observations1294958988
Number of reflections18641
<I/σ(I)>24.522.61.1
Completeness [%]99.997.5100
Redundancy21.318.422.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.8298Protein (10 mM Hepes, pH 7.8, 150 mM NaCl, 10% glycerol); Reservoir (2.0 M Ammonium sulfate; Cryoprotection (20% glycerol), temperature 298K, VAPOR DIFFUSION, SITTING DROP

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon