4K9E
Crystal structure of KIT D4D5 fragment in complex with anti-Kit antibodies Fab79D
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-03-18 |
Detector | ADSC QUANTUM 315 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 94.577, 94.577, 320.876 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.779 - 2.700 |
R-factor | 0.2484 |
Rwork | 0.247 |
R-free | 0.28230 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.756 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.800 |
High resolution limit [Å] | 2.700 | 5.810 | 2.700 |
Rmerge | 0.040 | 0.518 | |
Number of reflections | 24161 | ||
<I/σ(I)> | 10.1 | ||
Completeness [%] | 98.8 | 99.3 | 89.8 |
Redundancy | 7.8 | 7.7 | 5.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.2 | 20-24% PEG 400, 0.1 M Tris-HCl, pH 8.2, VAPOR DIFFUSION, HANGING DROP |