4JE6
Crystal structure of a human-like mitochondrial peptide deformylase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM30A |
Synchrotron site | ESRF |
Beamline | BM30A |
Temperature [K] | 100 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.450, 73.980, 109.390 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.960 - 2.000 |
R-factor | 0.1578 |
Rwork | 0.156 |
R-free | 0.18543 |
Structure solution method | rigid body |
Starting model (for MR) | 1zxz |
RMSD bond length | 0.014 |
RMSD bond angle | 1.354 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | REFMAC (5.2.0019) |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.040 |
High resolution limit [Å] | 1.940 | 1.940 |
Number of reflections | 30924 | |
<I/σ(I)> | 17.52 | 8.22 |
Completeness [%] | 97.6 | 85.6 |
Redundancy | 5.3 | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 5-15% PEG 5000 MME, 100mM MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |