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4J9X

Crystal structure of the complex of a hydroxyproline epimerase (TARGET EFI-506499, PSEUDOMONAS FLUORESCENS PF-5) with trans-4-hydroxy-l-proline

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2013-02-14
DetectorRAYONIX MX225HE
Wavelength(s)0.9793
Spacegroup nameP 21 21 21
Unit cell lengths74.755, 90.097, 103.913
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution32.763 - 1.700
R-factor0.1958
Rwork0.194
R-free0.22520
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2azp
RMSD bond length0.006
RMSD bond angle1.093
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.20)
Phasing softwareAMoRE
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]103.91390.0971.790
High resolution limit [Å]1.7005.3801.700
Rmerge0.0880.0450.531
Total number of observations1744366281
Number of reflections77405
<I/σ(I)>11.611.91.5
Completeness [%]99.598.799
Redundancy6.76.66
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1sitting drop vapor diffuction5.6298Protein (15 mM Hepes pH 8.0, 150 mM NaCl, 5% glycerol, 20 mM TRANS-4-HYDROXY-L-PROLINE), Reservoir (0.17 M Ammonium Acetate, 0.085 M Sodium Citrate pH 5.6, 25.5 %(w/v) PEG 4000, 15 %(v/v) Glycerol), Soak 2 minutes in (Reservoir + 20% Ethylene Glycol, 100 mM TRANS-4-HYDROXY-L-PROLINE), sitting drop vapor diffuction, temperature 298K

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PDB entries from 2024-05-15

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