4IYA
Structure of the Y250A mutant of the PANTON-VALENTINE LEUCOCIDIN S component from STAPHYLOCOCCUS AUREUS
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-4 |
Synchrotron site | ESRF |
Beamline | ID14-4 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-11-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.94800 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 85.340, 89.320, 38.100 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.690 - 1.550 |
R-factor | 0.1665 |
Rwork | 0.165 |
R-free | 0.18930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1t5r |
RMSD bond length | 0.009 |
RMSD bond angle | 1.060 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.840 | 1.600 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.067 | 0.753 |
Number of reflections | 43049 | |
<I/σ(I)> | 18.8 | 3.2 |
Completeness [%] | 99.7 | 99.9 |
Redundancy | 6.9 | 5.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4 | 285 | 5% PEG 6000, 0.1M NaCitrate , pH 4.00, VAPOR DIFFUSION, SITTING DROP, temperature 285K |