4HLI
DNA dodecamer containing 5-hydroxymethyl-cytosine
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X06DA |
| Synchrotron site | SLS |
| Beamline | X06DA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2012-06-09 |
| Detector | DECTRIS PILATUS 2M-F |
| Wavelength(s) | 1.000670 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 25.175, 40.590, 65.399 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 50.000 - 1.990 |
| R-factor | 0.2518 |
| Rwork | 0.252 |
| R-free | 0.32810 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1dpn |
| RMSD bond length | 0.007 |
| RMSD bond angle | 0.073 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER |
| Refinement software | SHELXL-97 |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.110 |
| High resolution limit [Å] | 1.990 | 1.990 |
| Rmerge | 0.038 | 0.217 |
| Number of reflections | 4315 | |
| <I/σ(I)> | 21.23 | 5.81 |
| Completeness [%] | 96.5 | 94.6 |
| Redundancy | 3.55 | 3.27 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.04m sodium cacodylate buffer, 0.08M NaCCl, 0.12m KCl, 0.02m MgCl2, 0.012m spermine tetra hydrochloride, 35% MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
