4HEA
Crystal structure of the entire respiratory complex I from Thermus thermophilus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2011-09-23 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.9 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 96.280, 340.890, 263.300 |
Unit cell angles | 90.00, 100.57, 90.00 |
Refinement procedure
Resolution | 39.998 - 3.303 |
R-factor | 0.2034 |
Rwork | 0.202 |
R-free | 0.23930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB entries 3I9V and 4HE8 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.467 |
Data reduction software | MOSFLM |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: dev_1041)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 3.480 |
High resolution limit [Å] | 3.300 | 3.300 |
Rmerge | 0.251 | 1.869 |
Number of reflections | 247920 | |
<I/σ(I)> | 5.1 | 1 |
Completeness [%] | 99.5 | 99 |
Redundancy | 6.1 | 5.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 295 | 100 mM Bis-Tris pH 6.0, 19% (w/v) polyethylene glycol (PEG) 4000, 100 mM KCl, 100 mM glutaric acid pH 6.0 and 2.2 mM FOS-CHOLINE-8 fluorinated , VAPOR DIFFUSION, SITTING DROP, temperature 295K |
2 | VAPOR DIFFUSION, SITTING DROP | 6 | 295 | 100 mM Bis-Tris pH 6.0, 24% (w/v) polyethylene glycol (PEG) 4000, 100 mM KCl, 100 mM glutaric acid pH 6.0 and 50 mM NDSB-201, VAPOR DIFFUSION, SITTING DROP, temperature 295K |
3 | VAPOR DIFFUSION, SITTING DROP | 6 | 295 | 100 mM Bis-Tris pH 6.0, 26% (w/v) polyethylene glycol (PEG) 4000, 100 mM KCl, 100 mM glutaric acid pH 6.0 and 0.6% DDM, VAPOR DIFFUSION, SITTING DROP, temperature 295K |