4H8A
Crystal structure of ureidoglycolate dehydrogenase in binary complex with NADH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-04-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97948 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 162.509, 162.509, 60.988 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.072 - 1.640 |
R-factor | 0.2304 |
Rwork | 0.230 |
R-free | 0.24640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1xrh |
RMSD bond length | 0.007 |
RMSD bond angle | 1.139 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.7.2_869) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.700 |
High resolution limit [Å] | 1.640 | 3.530 | 1.640 |
Rmerge | 0.097 | 0.051 | 0.968 |
Number of reflections | 99377 | ||
<I/σ(I)> | 6 | ||
Completeness [%] | 99.5 | 95.5 | 100 |
Redundancy | 12 | 10.7 | 12.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 295 | 0.1 M MES, pH 6.0, 4.0 M sodium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 295K |