Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4GZA

Complex of mouse Plexin A2 - Semaphorin 3A - Neuropilin-1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2011-04-15
DetectorDECTRIS PILATUS 2M
Wavelength(s)0.91730
Spacegroup nameC 1 2 1
Unit cell lengths191.632, 293.604, 252.176
Unit cell angles90.00, 106.38, 90.00
Refinement procedure
Resolution125.506 - 7.000
R-factor0.2847
Rwork0.285
R-free0.28480
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3okt 1q47 4gz9
RMSD bond length0.014
RMSD bond angle1.202
Data reduction softwareMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.7.3_928))
Data quality characteristics
 Overall
Low resolution limit [Å]126.000
High resolution limit [Å]7.000
Number of reflections20176
Completeness [%]95.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.529370mM HEPES, pH 7.5, 1.4% w/v PEG 400, 12% v/v glycerol, 1.4M ammonium sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
2VAPOR DIFFUSION, SITTING DROP7.529370mM HEPES, pH 7.5, 1.4% w/v PEG 400, 12% v/v glycerol, 1.4M ammonium sulphate, 1% v/v ethyl acetate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
3VAPOR DIFFUSION, SITTING DROP7.529370mM HEPES, pH 7.5, 1.4% w/v PEG 400, 12% v/v glycerol, 1.4M ammonium sulphate, 8% v/v acetonitrile , VAPOR DIFFUSION, SITTING DROP, temperature 293K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon