4GZA
Complex of mouse Plexin A2 - Semaphorin 3A - Neuropilin-1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2011-04-15 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.91730 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 191.632, 293.604, 252.176 |
Unit cell angles | 90.00, 106.38, 90.00 |
Refinement procedure
Resolution | 125.506 - 7.000 |
R-factor | 0.2847 |
Rwork | 0.285 |
R-free | 0.28480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3okt 1q47 4gz9 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.202 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.7.3_928)) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 126.000 |
High resolution limit [Å] | 7.000 |
Number of reflections | 20176 |
Completeness [%] | 95.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 70mM HEPES, pH 7.5, 1.4% w/v PEG 400, 12% v/v glycerol, 1.4M ammonium sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
2 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 70mM HEPES, pH 7.5, 1.4% w/v PEG 400, 12% v/v glycerol, 1.4M ammonium sulphate, 1% v/v ethyl acetate, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
3 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 70mM HEPES, pH 7.5, 1.4% w/v PEG 400, 12% v/v glycerol, 1.4M ammonium sulphate, 8% v/v acetonitrile , VAPOR DIFFUSION, SITTING DROP, temperature 293K |