Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4GY9

Crystal Structure of Medicago truncatula Nodulin 13 (MtN13) in complex with N6-isopentenyladenine (2iP)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyCCD
Collection date2012-05-31
DetectorRAYONIX MX-225
Spacegroup nameP 62 2 2
Unit cell lengths96.596, 96.596, 112.031
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.300 - 2.040
R-factor0.167
Rwork0.165
R-free0.19800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3RWS
RMSD bond length0.019
RMSD bond angle1.409
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.8_1069)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.160
High resolution limit [Å]2.0402.040
Rmerge0.0990.706
Number of reflections20324
<I/σ(I)>24.333.95
Completeness [%]99.798.2
Redundancy14.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
17.12921.5 M sodium malonate, Dehydration at elevated sodium malonate concentration (1.9 M), pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 292K

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon