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4GMA

Crystal structure of the adenosylcobalamin riboswitch

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 315r
Wavelength(s)0.97
Spacegroup nameC 2 2 2
Unit cell lengths96.648, 243.545, 87.102
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.260 - 3.940
R-factor0.2628
Rwork0.262
R-free0.27520
Structure solution methodMIR
RMSD bond length0.003
RMSD bond angle0.867
Data reduction softwareXDS
Data scaling softwareSCALA (3.3.20)
Phasing softwareSHARP
Refinement softwareBUSTER-TNT (BUSTER 2.10.0)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]88.37488.3744.890
High resolution limit [Å]3.94014.6704.640
Rmerge0.0200.498
Total number of observations5353067
Number of reflections8706
<I/σ(I)>13.730.41.6
Completeness [%]99.487.599.9
Redundancy3.52.93.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1hanging drop7.529810% isopropanol, 300 mM magnesium chloride, 100 mM sodium HEPES pH 7.5, hanging drop, temperature 298K
1hanging drop7.529810% isopropanol, 300 mM magnesium chloride, 100 mM sodium HEPES pH 7.5, hanging drop, temperature 298K
1hanging drop7.529810% isopropanol, 300 mM magnesium chloride, 100 mM sodium HEPES pH 7.5, hanging drop, temperature 298K
1hanging drop7.529810% isopropanol, 300 mM magnesium chloride, 100 mM sodium HEPES pH 7.5, hanging drop, temperature 298K

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PDB entries from 2024-05-15

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