4GMA
Crystal structure of the adenosylcobalamin riboswitch
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97 |
Spacegroup name | C 2 2 2 |
Unit cell lengths | 96.648, 243.545, 87.102 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.260 - 3.940 |
R-factor | 0.2628 |
Rwork | 0.262 |
R-free | 0.27520 |
Structure solution method | MIR |
RMSD bond length | 0.003 |
RMSD bond angle | 0.867 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | SHARP |
Refinement software | BUSTER-TNT (BUSTER 2.10.0) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 88.374 | 88.374 | 4.890 |
High resolution limit [Å] | 3.940 | 14.670 | 4.640 |
Rmerge | 0.020 | 0.498 | |
Total number of observations | 535 | 3067 | |
Number of reflections | 8706 | ||
<I/σ(I)> | 13.7 | 30.4 | 1.6 |
Completeness [%] | 99.4 | 87.5 | 99.9 |
Redundancy | 3.5 | 2.9 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | hanging drop | 7.5 | 298 | 10% isopropanol, 300 mM magnesium chloride, 100 mM sodium HEPES pH 7.5, hanging drop, temperature 298K |
1 | hanging drop | 7.5 | 298 | 10% isopropanol, 300 mM magnesium chloride, 100 mM sodium HEPES pH 7.5, hanging drop, temperature 298K |
1 | hanging drop | 7.5 | 298 | 10% isopropanol, 300 mM magnesium chloride, 100 mM sodium HEPES pH 7.5, hanging drop, temperature 298K |
1 | hanging drop | 7.5 | 298 | 10% isopropanol, 300 mM magnesium chloride, 100 mM sodium HEPES pH 7.5, hanging drop, temperature 298K |