4GK9
Crystal structure of Burkholderia oklahomensis agglutinin (BOA) bound to 3a,6a-mannopentaose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2011-11-29 |
Detector | RIGAKU RAXIS HTC |
Wavelength(s) | 1.5418 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 75.622, 75.622, 132.321 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.100 - 1.900 |
R-factor | 0.1664 |
Rwork | 0.165 |
R-free | 0.19310 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.068 |
Data reduction software | d*TREK (9.9.9.4D) |
Data scaling software | d*TREK (9.9.9.4D) |
Phasing software | PHASER (2.3.0) |
Refinement software | PHENIX (1.7.3_928) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.100 | 38.100 | 1.970 |
High resolution limit [Å] | 1.900 | 4.090 | 1.900 |
Rmerge | 0.080 | 0.057 | 0.254 |
Total number of observations | 46641 | 13102 | |
Number of reflections | 30821 | ||
<I/σ(I)> | 17.8 | 43.5 | 3.6 |
Completeness [%] | 99.4 | 100 | 92.7 |
Redundancy | 12.15 | 13.6 | 4.68 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 1.2 M sodium citrate, 0.15 M sodium cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K |