4GBS
Crystal structure of a putative lipoprotein (BF2707) from Bacteroides fragilis NCTC 9343 at 2.75 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-05-31 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795,0.9184 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 66.009, 66.009, 263.457 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.676 - 2.480 |
R-factor | 0.1983 |
Rwork | 0.197 |
R-free | 0.22510 |
Structure solution method | MAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.090 |
Data reduction software | XDS |
Data scaling software | XSCALE (March 15, 2012) |
Phasing software | SHELX |
Refinement software | BUSTER-TNT (2.10.0) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.676 | 46.676 | 2.570 |
High resolution limit [Å] | 2.480 | 5.310 | 2.480 |
Rmerge | 0.072 | 0.050 | 1.170 |
Rmeas | 0.078 | 0.055 | 1.269 |
Total number of observations | 137544 | ||
Number of reflections | 21701 | 2441 | 2133 |
<I/σ(I)> | 14.65 | 30 | 1.7 |
Completeness [%] | 99.6 | 98.3 | 99.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 277 | 2.40M ammonium sulfate, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K |