Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4DY9

Leishmania major Peroxidase is a Cytochrome c Peroxidase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2011-06-24
DetectorRIGAKU SATURN 944+
Wavelength(s)1.54
Spacegroup nameP 21 21 21
Unit cell lengths35.280, 44.000, 64.379
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution22.000 - 2.082
R-factor0.1635
Rwork0.161
R-free0.21170
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)yeast cytochrome c
RMSD bond length0.007
RMSD bond angle1.214
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.7.1_743))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]36.3002.120
High resolution limit [Å]2.0802.080
Rmerge0.043
Number of reflections6330
<I/σ(I)>64.338.6
Completeness [%]99.197.8
Redundancy5.54
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.4298PEG 2K MME, Potassium Bromide, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon