4DB5
Crystal structure of Rabbit GITRL
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-09-27 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0750 |
Spacegroup name | F 2 3 |
Unit cell lengths | 127.047, 127.047, 127.047 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.147 - 1.522 |
R-factor | 0.1614 |
Rwork | 0.161 |
R-free | 0.17570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3fc0 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.171 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX (1.7.3_928) |
Refinement software | PHENIX (1.7.3_928) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.550 |
High resolution limit [Å] | 1.520 | 4.130 | 1.520 |
Rmerge | 0.051 | 0.025 | 0.688 |
Number of reflections | 26128 | ||
<I/σ(I)> | 12.5 | ||
Completeness [%] | 100.0 | 99.3 | 100 |
Redundancy | 33.1 | 32.1 | 32.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | Protein (20 mM Hepes, pH 7.5, 150 mM NaCl, 10% glycerol; Reservoir (0.1M Bis-Tris Propane pH 7.0, 2.4M DL-Malic acid); Cryoprotection (Reservoir + 30% glycerol), Sitting Drop, Vapor Diffusion, temperature 298K, VAPOR DIFFUSION, SITTING DROP |