4D8I
High resolution structures of monomeric S. pyogenes SpeB reveals role of glycine-rich active site loop
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-12-10 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.71941 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 114.907, 50.137, 37.463 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.618 - 1.377 |
R-factor | 0.1651 |
Rwork | 0.164 |
R-free | 0.19140 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.017 |
RMSD bond angle | 1.633 |
Data reduction software | MOSFLM |
Data scaling software | HKL-2000 |
Phasing software | SOLVE |
Refinement software | PHENIX ((phenix.refine: 1.7.3_928)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.618 | 1.450 | 1.390 |
High resolution limit [Å] | 1.377 | 1.420 | 1.377 |
Rmerge | 0.096 | 0.605 | 0.729 |
Number of reflections | 45738 | ||
<I/σ(I)> | 17.8 | 2.1 | 2 |
Completeness [%] | 98.8 | 95.8 | 100 |
Redundancy | 2.5 | 4.4 | 4.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 0.15 M Sodium Nitrate, 26% PEG3350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K |