Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4D13

Crystal structure of cofactor-free urate oxidase in complex with its 5-peroxoisourate intermediate (X-ray dose, 2.2 kGy)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I02
Synchrotron siteDiamond
BeamlineI02
Temperature [K]100
Detector technologyPIXEL
Collection date2013-12-08
DetectorDECTRIS PILATUS 6M
Spacegroup nameI 2 2 2
Unit cell lengths79.930, 95.080, 104.060
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.970 - 1.300
R-factor0.10883
Rwork0.108
R-free0.13155
Structure solution methodOTHER
Starting model (for MR)NONE
RMSD bond length0.009
RMSD bond angle1.447
Data reduction softwareXDS
Data scaling softwareAimless
Refinement softwareREFMAC (5.8.0069)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.330
High resolution limit [Å]1.3001.300
Rmerge0.1000.620
Number of reflections96758
<I/σ(I)>9.82.4
Completeness [%]99.698.6
Redundancy6.66.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1820MG/ML UOX IN 50 MM TRIS-ACETATE PH 8.0 SATURATED WITH 9-METHYL URIC ACID UNDER ANAEROBIC CONDITIONS RESERVOIR: 8% PEG 8000, 50 MM TRIS-ACETATE PH 8.0 CRYSTALLIZATION WAS CARRIED OUT ANAEROBICALLY. CRYSTALS WERE INCUBATED WITH A RESERVOIR SOLUTION ENRICHED BY 10 MM H2O2 AND 20% GLYCEROL TO GENERATE THE PEROXIDE

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon