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4C5A

The X-ray crystal structures of D-alanyl-D-alanine ligase in complex ADP and D-cycloserine phosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyCCD
DetectorADSC CCD
Spacegroup nameP 21 21 21
Unit cell lengths53.790, 97.510, 109.990
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.760 - 1.650
R-factor0.20634
Rwork0.205
R-free0.23726
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1iow
RMSD bond length0.014
RMSD bond angle1.603
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (5.5.0102)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.0001.710
High resolution limit [Å]1.6501.650
Rmerge0.0800.660
Number of reflections70170
<I/σ(I)>23.82.1
Completeness [%]99.899.7
Redundancy6.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1

219869

PDB entries from 2024-05-15

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