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3ZXA

Structure and Assembly of Turnip Crinkle Virus I. X-ray Crystallographic Structure Analysis at 3.2 A Resolution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsELLIOTT GX-6
Temperature [K]293
Detector technologyFILM
DetectorKODAK NO-SCREEN X-RAY FILM
Wavelength(s)1.5418
Spacegroup nameI 2 2 2
Unit cell lengths348.800, 379.100, 397.400
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution100.000 - 3.200
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)TBSV
Data reduction softwareOPTRONICS (P1000 ROTATING DRUM SCANNER)
Data scaling softwareHARVARD (SOFTWARE)
Phasing softwareCOMBINE
Refinement softwareBILDER
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]100.000
High resolution limit [Å]3.2003.200
Rmerge0.180
Number of reflections310000
Completeness [%]73.0
Redundancy2.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
17THE METHYL MERCURY ADDUCT WAS OBTAINED BY BRINGING STOCK SOLUTION OF VIRUS (3.5% TCV (W/V) IN 0.01% SODIUM AZIDE,) TO 6 EQUIVALENT METHYL MERCURY/PROTEIN SUBUNIT BY ADDITION OF 15 MILLIMOLAR-METHYL MERCURY NITRATE AND INCUBATING FOR 1 H. CRYSTALLIZATION WAS THEN INITIATED BY ADDITION OF AN APPROXIMATELY EQUAL VOLUME OF SATURATED SODIUM CITRATE (PH 7.0) AND ALLOWED TO PROCEED UNDISTURBED FOR 2 TO 4 MONTHS. THE OPTIMUM CONCENTRATION OF SODIUM CITRATE REQUIRED TO PRODUCE LARGE CRYSTALS VARIED FROM EXPERIMENT TO EXPERIMENT BUT WAS GENERALLY IN THE RANGE 42 TO 46% SATURATED.

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PDB entries from 2024-05-15

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