Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3ZOD

Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii with bound benzene-1,4-diol

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsELETTRA BEAMLINE 5.2R
Synchrotron siteELETTRA
Beamline5.2R
Temperature [K]100
Detector technologyCCD
Collection date2012-04-30
DetectorMARRESEARCH SX-165
Spacegroup nameP 61 2 2
Unit cell lengths46.395, 46.395, 269.637
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution39.740 - 1.680
R-factor0.21508
Rwork0.213
R-free0.24851
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2r6v
RMSD bond length0.012
RMSD bond angle1.620
Data reduction softwareXDS
Phasing softwarePHASER
Refinement softwareREFMAC (5.7.0029)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.0001.780
High resolution limit [Å]1.6801.680
Rmerge0.0600.470
Number of reflections18582
<I/σ(I)>22.63.7
Completeness [%]89.291.6
Redundancy11.23.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION293VAPOR DIFFUSION AT 293K; CONDITIONS CONTAINING PEG 3350 OR 6000 (10-20% W/V) AS PRECIPITATION AGENT AND DIFFERENT SALTS (50-200 MM MAGNESIUM CLORIDE, POTASSIUM FORMATE, NATRIUM FORMATE, AMMONIUM FORMATE, MAGNESIUM FORMATE)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon