3ZOD
Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii with bound benzene-1,4-diol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 5.2R |
Synchrotron site | ELETTRA |
Beamline | 5.2R |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-04-30 |
Detector | MARRESEARCH SX-165 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 46.395, 46.395, 269.637 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.740 - 1.680 |
R-factor | 0.21508 |
Rwork | 0.213 |
R-free | 0.24851 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2r6v |
RMSD bond length | 0.012 |
RMSD bond angle | 1.620 |
Data reduction software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 1.780 |
High resolution limit [Å] | 1.680 | 1.680 |
Rmerge | 0.060 | 0.470 |
Number of reflections | 18582 | |
<I/σ(I)> | 22.6 | 3.7 |
Completeness [%] | 89.2 | 91.6 |
Redundancy | 11.2 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | VAPOR DIFFUSION AT 293K; CONDITIONS CONTAINING PEG 3350 OR 6000 (10-20% W/V) AS PRECIPITATION AGENT AND DIFFERENT SALTS (50-200 MM MAGNESIUM CLORIDE, POTASSIUM FORMATE, NATRIUM FORMATE, AMMONIUM FORMATE, MAGNESIUM FORMATE) |