3X0G
Crystal structure of the ectodomain of African green monkey CD81 large extracellular loop (agmCD81-LEL)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-06-27 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 39.156, 39.700, 59.915 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.276 - 1.899 |
R-factor | 0.232 |
Rwork | 0.231 |
R-free | 0.25430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4BKH |
RMSD bond length | 0.009 |
RMSD bond angle | 1.163 |
Data reduction software | XDS (package) |
Data scaling software | XDS (package) |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.7.3_928)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 27.878 | 2.010 |
High resolution limit [Å] | 1.899 | 1.900 |
Rmerge | 0.064 | 0.485 |
Number of reflections | 7580 | |
<I/σ(I)> | 21.28 | 2.42 |
Completeness [%] | 97.2 | 83.1 |
Redundancy | 5.93 | 2.52 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 295 | 5% Ethanol, 5% MPD, 0.1M Tris pH 8.5, 200mM Sodium Chloride, VAPOR DIFFUSION, HANGING DROP, temperature 295K |