3WO6
Crystal structure of YidC from Bacillus halodurans (form I)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-12-05 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 43.926, 60.631, 58.903 |
Unit cell angles | 90.00, 100.35, 90.00 |
Refinement procedure
Resolution | 28.297 - 2.403 |
R-factor | 0.2429 |
Rwork | 0.242 |
R-free | 0.25870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | SeM-substituted protein structure |
RMSD bond length | 0.002 |
RMSD bond angle | 0.714 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX ((Phaser-MR)) |
Refinement software | PHENIX (1.7.2_869) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.440 |
High resolution limit [Å] | 2.400 | 6.510 | 2.400 |
Rmerge | 0.068 | 0.042 | 0.318 |
Number of reflections | 10889 | ||
<I/σ(I)> | 15.2 | ||
Completeness [%] | 91.0 | 90.4 | 85.6 |
Redundancy | 2.6 | 3.1 | 1.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | lipidic qubic phase | 6 | 293 | 28-32% PEG500DME, 2. mM CdCl2, 100mM Na-(CH3)2AsO2, pH 6.0, lipidic qubic phase, temperature 293K |