3WJR
crystal structure of HypE in complex with a nucleotide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-01-22 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.1000 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 102.657, 102.657, 105.728 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.998 - 1.864 |
R-factor | 0.1741 |
Rwork | 0.173 |
R-free | 0.19970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3vyt |
RMSD bond length | 0.007 |
RMSD bond angle | 1.123 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX ((phenix.refine: 1.8.2_1309)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.980 |
High resolution limit [Å] | 1.860 | 1.860 |
Number of reflections | 47503 | |
<I/σ(I)> | 22.14 | 4.46 |
Completeness [%] | 99.6 | 98 |
Redundancy | 13 | 13 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M MES-NaOH, 1.4-1.55M ammonium sulfate, 1.7%(v/v) polyethylene glycol 400, 6%(v/v) glycerol, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K |