Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3VY2

N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-5A
Synchrotron sitePhoton Factory
BeamlineBL-5A
Temperature [K]95
Detector technologyCCD
Collection date2010-12-19
DetectorADSC QUANTUM 210r
Wavelength(s)1.000
Spacegroup nameP 1 21 1
Unit cell lengths36.868, 83.038, 40.239
Unit cell angles90.00, 94.38, 90.00
Refinement procedure
Resolution20.000 - 1.600
R-factor0.17146
Rwork0.170
R-free0.19202
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1flm
RMSD bond length0.007
RMSD bond angle1.058
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareREFMAC (5.5.0102)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0001.690
High resolution limit [Å]1.6001.600
Rmerge0.0450.196
Number of reflections31712
Completeness [%]99.5100
Redundancy7.47.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.527723% PEG 6000, 0.1M Tris, 0.2M sodium acetate, 19.8% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K

231029

PDB entries from 2025-02-05

PDB statisticsPDBj update infoContact PDBjnumon