3VRW
VDR ligand binding domain in complex with 22S-Butyl-2-methylidene-26,27-dimethyl-19,24-dinor-1alpha,25-dihydroxyvitamin D3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2010-10-11 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 1.000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 154.210, 43.210, 42.380 |
Unit cell angles | 90.00, 95.49, 90.00 |
Refinement procedure
Resolution | 33.010 - 2.400 |
R-factor | 0.2197 |
Rwork | 0.218 |
R-free | 0.25640 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.017 |
RMSD bond angle | 1.478 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHASER (2.2.1) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 76.751 | 33.013 | 2.530 |
High resolution limit [Å] | 2.400 | 7.590 | 2.400 |
Rmerge | 0.048 | 0.336 | |
Rmeas | 0.058 | 0.395 | |
Rpim | 0.032 | 0.206 | |
Total number of observations | 940 | 5088 | |
Number of reflections | 10065 | ||
<I/σ(I)> | 10.2 | 22.5 | 3.2 |
Completeness [%] | 91.9 | 82.1 | 91.4 |
Redundancy | 3.5 | 3.1 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | MES-Na, Na-Formate, PEG 4000, Ethyleneglycol, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K |