Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3VRU

VDR ligand binding domain in complex with 2-Methylidene-19,24-dinor-1alpha,25-dihydroxy vitaminD3

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE AR-NW12A
Synchrotron sitePhoton Factory
BeamlineAR-NW12A
Temperature [K]95
Detector technologyCCD
Collection date2010-10-11
DetectorADSC QUANTUM 210
Wavelength(s)1.000
Spacegroup nameC 1 2 1
Unit cell lengths154.340, 42.290, 42.210
Unit cell angles90.00, 95.89, 90.00
Refinement procedure
Resolution26.980 - 2.000
R-factor0.22219
Rwork0.219
R-free0.27935
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.024
RMSD bond angle2.147
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.16)
Phasing softwarePHASER (2.2.1)
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]76.76326.9832.110
High resolution limit [Å]2.0006.3202.000
Rmerge0.0610.308
Number of reflections17728
<I/σ(I)>99.12.5
Completeness [%]96.479.696.3
Redundancy3.22.83.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7293MES-Na, Na-Formate, PEG 4000, Ethyleneglycol, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon