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3VPS

Structure of a novel NAD dependent-NDP-hexosamine 5,6-dehydratase, TunA, involved in tunicamycin biosynthesis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
DetectorRIGAKU SATURN 944+
Spacegroup nameP 1
Unit cell lengths45.453, 51.061, 67.804
Unit cell angles98.13, 106.65, 94.36
Refinement procedure
Resolution22.260 - 1.900
R-factor0.18812
Rwork0.186
R-free0.23522
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.023
RMSD bond angle2.002
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]22.2601.949
High resolution limit [Å]1.9001.900
Rmerge0.188
Number of reflections42667
<I/σ(I)>14.21.4
Completeness [%]98.55
Redundancy3.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP629320% polyethylene glycol 3350, 100mM 8v/v tascimate, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 293K

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PDB entries from 2024-05-15

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