Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3VNY

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE AR-NE3A
Synchrotron sitePhoton Factory
BeamlineAR-NE3A
Temperature [K]95
Detector technologyCCD
Collection date2010-01-29
DetectorADSC QUANTUM 270
Wavelength(s)1.0000
Spacegroup nameI 41 2 2
Unit cell lengths101.126, 101.126, 217.881
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.580 - 1.500
R-factor0.17264
Rwork0.172
R-free0.18987
Structure solution methodMAD
RMSD bond length0.007
RMSD bond angle1.066
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareSOLVE
Refinement softwareREFMAC (5.5.0109)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.6841.530
High resolution limit [Å]1.5001.500
Rmerge0.0620.392
Number of reflections90146
<I/σ(I)>476.8
Completeness [%]100.0100
Redundancy14.614.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2932.0M sodium phosphate monobasic monohydrate/potassium phosphate dibasic (0.5/9.5 [v/v]), VAPOR DIFFUSION, SITTING DROP, temperature 293K
1VAPOR DIFFUSION, SITTING DROP2932.0M sodium phosphate monobasic monohydrate/potassium phosphate dibasic (0.5/9.5 [v/v]), VAPOR DIFFUSION, SITTING DROP, temperature 293K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon