3VGM
Crystal structure of a ROK family glucokinase from Streptomyces griseus in complex with glucose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2008-10-17 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1.00000 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 108.190, 108.190, 141.180 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 - 1.840 |
R-factor | 0.1683 |
Rwork | 0.167 |
R-free | 0.18500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2aa4 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.286 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (refmac_5.5.0102) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.890 | |
High resolution limit [Å] | 1.840 | 8.230 | 1.840 |
Rmerge | 0.041 | 0.024 | 0.330 |
Rmeas | 0.026 | 0.365 | |
Number of reflections | 42812 | 533 | 3094 |
<I/σ(I)> | 32.89 | 77.22 | 4.31 |
Completeness [%] | 99.8 | 90.2 | 98.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.1 | 293 | 0.9M K/Na tartrate, 0.2M NaCl, 0.1M imidazole , pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 293K |