Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3VE1

The 2.9 angstrom crystal structure of Transferrin binding protein B (TbpB) from serogroup B M982 Neisseria meningitidis in complex with human transferrin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyCCD
Collection date2011-06-26
DetectorADSC QUANTUM 315
Wavelength(s)0.9795
Spacegroup nameP 21 21 21
Unit cell lengths128.023, 153.509, 169.511
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.928 - 2.956
R-factor0.2087
Rwork0.207
R-free0.24880
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.409
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER (2.3.0)
Refinement softwarePHENIX (1.7.1_743)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.00040.0003.060
High resolution limit [Å]2.9506.3502.950
Rmerge0.1150.0490.640
Number of reflections70285
<I/σ(I)>9.5
Completeness [%]100.099.9100
Redundancy10.59.810.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.52930.1M sodium cacodylate pH 6.5, 14% PEG 3350, 0.1M sodium malonate, and 20% glycerol, vapor diffusion, hanging drop, temperature 293K

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon