3V9G
Crystal structure of human 1-pyrroline-5-carboxylate dehydrogenase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-02-26 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979181 |
Spacegroup name | P 65 |
Unit cell lengths | 150.717, 150.717, 191.980 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.665 - 2.500 |
R-factor | 0.2048 |
Rwork | 0.204 |
R-free | 0.23850 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.222 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX (autosol) |
Refinement software | PHENIX (1.7_650) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.590 |
High resolution limit [Å] | 2.500 | 5.380 | 2.500 |
Rmerge | 0.075 | 0.055 | 0.539 |
Number of reflections | 84960 | ||
<I/σ(I)> | 14.6 | ||
Completeness [%] | 99.7 | 97.7 | 100 |
Redundancy | 3.8 | 3.7 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | reservoir: 22.5% PEG3350, 0.2 M ammonium sulfate, 0.1 M HEPES, cryoprotectant: 25% PEG3350, 0.2 M ammonium sulfate, 0.1 M HEPES, 25% glycerol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K |