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3UF0

Crystal structure of a putative NAD(P) dependent gluconate 5-dehydrogenase from Beutenbergia cavernae(EFI target EFI-502044) with bound NADP (low occupancy)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]100
Detector technologyCCD
Collection date2011-09-15
DetectorADSC QUANTUM 315r
Wavelength(s)0.9793
Spacegroup nameP 43 21 2
Unit cell lengths115.470, 115.470, 76.182
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.745 - 2.000
R-factor0.1633
Rwork0.162
R-free0.19460
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3o03
RMSD bond length0.007
RMSD bond angle1.034
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.16)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.7_650)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]81.68542.7402.110
High resolution limit [Å]2.0006.3202.000
Rmerge0.0330.424
Total number of observations1356753029
Number of reflections35340
<I/σ(I)>20.118.81.8
Completeness [%]99.998.899.9
Redundancy10.910.910.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1sitting drop vapor diffuction4.6298Protein (10 mM Hepes, pH 7.8, 150 mM NaCl, 10% glycerol, 5 mM DTT, 5 mM MgCl2; Reservoir (100 mM NaAcetate pH 4.6, 2 M NaFormate); Cryoprotection (Reservoir + 20% glycerol), sitting drop vapor diffuction, temperature 298K

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