3T37
Crystal structure of pyridoxine 4-oxidase from Mesorbium loti
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL38B1 |
Synchrotron site | SPring-8 |
Beamline | BL38B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-06-13 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.380, 79.438, 136.429 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.034 - 2.193 |
R-factor | 0.187 |
Rwork | 0.185 |
R-free | 0.22020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3nne |
RMSD bond length | 0.008 |
RMSD bond angle | 1.198 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX ((phenix.refine: 1.7.3_928)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.280 | 2.240 |
High resolution limit [Å] | 2.193 | 2.240 | 2.200 |
Rmerge | 0.073 | 0.073 | 0.481 |
Number of reflections | 35380 | ||
<I/σ(I)> | 43.5 | 43.5 | |
Completeness [%] | 99.8 | 98.8 | 98.8 |
Redundancy | 8.6 | 8.6 | 8.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | HEPES Na-salt (pH7.5) 0.1M, 2-Propanol 10%, PEG 4000 20%, VAPOR DIFFUSION, SITTING DROP, temperature 293K |