3STG
Crystal structure of A58P, DEL(N59), and loop 7 truncated mutant of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-09-01 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.95368 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 81.690, 104.050, 149.620 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.990 - 2.200 |
R-factor | 0.1992 |
Rwork | 0.197 |
R-free | 0.23770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3stc |
RMSD bond length | 0.009 |
RMSD bond angle | 1.101 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.15) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.849 | 36.849 | 2.320 |
High resolution limit [Å] | 2.200 | 6.960 | 2.200 |
Rmerge | 0.041 | 0.347 | |
Rmeas | 0.045 | 0.373 | |
Rpim | 0.018 | 0.137 | |
Total number of observations | 14446 | 69684 | |
Number of reflections | 65469 | ||
<I/σ(I)> | 18.9 | 41 | 6.9 |
Completeness [%] | 100.0 | 99.3 | 100 |
Redundancy | 7.3 | 6.4 | 7.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 297 | 20 mg/mL protein (in 10 mM BTP pH 7.5) mixed 1:1 with reservoir liquor containing 100 mM NaOAc (pH 4.6) and 0.6-3.0 M NaCl. Immediately prior to data collection, crystals were harvested and soaked briefly in cryoprotectant solution, comprising 20% glycerol and the reservoir solution, Vapor diffusion, hanging drop, temperature 297K |