3STC
Crystal structure of loop 7 truncated mutant of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-09-01 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.95368 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 81.780, 85.760, 163.220 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.560 - 1.910 |
R-factor | 0.2092 |
Rwork | 0.207 |
R-free | 0.24530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2qkf |
RMSD bond length | 0.011 |
RMSD bond angle | 1.158 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.15) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.560 | 36.558 | 2.020 |
High resolution limit [Å] | 1.910 | 6.050 | 1.910 |
Rmerge | 0.032 | 0.313 | |
Rmeas | 0.036 | 0.354 | |
Rpim | 0.014 | 0.159 | |
Total number of observations | 18256 | 62451 | |
Number of reflections | 88598 | ||
<I/σ(I)> | 14.5 | 31.6 | 4.2 |
Completeness [%] | 99.5 | 97.7 | 99.1 |
Redundancy | 5.9 | 6.1 | 4.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 297 | 20 mg/mL protein (in 10 mM BTP pH 7.5) mixed 1:1 with reservoir liquor containing 100 mM NaOAc (pH 4.6) and 0.6-3.0 M NaCl. Immediately prior to data collection, crystals were harvested and soaked briefly in cryoprotectant solution, comprising 20% glycerol and the reservoir solution, Vapor diffusion, hanging drop, temperature 297K |