3SPV
Crystal structure of a peptide-HLA complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-11-18 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.984 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.560, 81.460, 110.020 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.584 - 1.300 |
R-factor | 0.1971 |
Rwork | 0.196 |
R-free | 0.21920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1m05 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.036 |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.6.1_357) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 100.000 | 1.400 | |
High resolution limit [Å] | 1.300 | 10.000 | 1.300 |
Rmerge | 0.074 | 0.033 | 0.454 |
Rmeas | 0.036 | 0.485 | |
Number of reflections | 111282 | 240 | 21688 |
<I/σ(I)> | 14.9 | 30.48 | 4.36 |
Completeness [%] | 99.1 | 79.7 | 98.1 |
Redundancy | 8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5.6 | 298 | 15-20% PEG 4000, 0.2M ammonium acetate, 0.1M Na-Citrate, pH 5.6, vapor diffusion, temperature 298K |