3S5P
Crystal structure of ribose-5-phosphate isomerase B RpiB from Giardia lamblia
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-04-07 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97946 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 89.200, 89.200, 68.240 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.620 - 2.300 |
R-factor | 0.2 |
Rwork | 0.198 |
R-free | 0.23440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vvr |
RMSD bond length | 0.014 |
RMSD bond angle | 1.416 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 2.360 | ||
High resolution limit [Å] | 2.300 | 10.290 | 2.300 |
Rmerge | 0.037 | 0.016 | 0.535 |
Number of reflections | 13930 | 157 | 1003 |
<I/σ(I)> | 22.39 | 60.4 | 2.53 |
Completeness [%] | 97.6 | 84 | 96.3 |
Redundancy | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 289 | GilaA.01163.a.A1 PS00138 at 24 mg/mL with 5 mM ribose-5-phosphate against JCSG+ screen condition A6 0.2 M Li2SO4, 0.1 M phosphate/citrate pH 4.2, 20% PEG 1000, crystal tracking ID 215117a6, VAPOR DIFFUSION, SITTING DROP, temperature 289K |