3RS6
Crystal structure Dioclea virgata lectin in complexed with X-mannose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE D03B-MX1 |
Synchrotron site | LNLS |
Beamline | D03B-MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-02-12 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 1.42 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 64.550, 86.690, 90.280 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.930 - 1.800 |
R-factor | 0.19154 |
Rwork | 0.189 |
R-free | 0.23220 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.024 |
RMSD bond angle | 2.710 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.5.0110) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 21.330 | |
High resolution limit [Å] | 1.800 | 1.800 |
Number of reflections | 23748 | |
Completeness [%] | 99.7 | 99.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | lectin was resuspended in 1 mM Tris HCl buffer pH 7.0 containing 5 mM CaCl2 and 5 mM MnCl2 in a final concentration of 10 mg mL 1.native lectin was resuspended in Milli-Q water in a final concentration of 12 mg mL 1 and 3 mM of X-Man (5-bromo-4-chloro-3- Appl Biochem Biotechnol indolyl- -D-mannose), VAPOR DIFFUSION, HANGING DROP, temperature 293K |