3RB4
Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesion
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 24-ID-E |
| Synchrotron site | APS |
| Beamline | 24-ID-E |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2007-12-07 |
| Detector | ADSC QUANTUM 315 |
| Wavelength(s) | 0.97949 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 53.267, 109.995, 101.535 |
| Unit cell angles | 90.00, 101.35, 90.00 |
Refinement procedure
| Resolution | 20.000 - 2.805 |
| R-factor | 0.20765 |
| Rwork | 0.205 |
| R-free | 0.25644 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3raq |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.454 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | AMoRE |
| Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 20.000 | 2.890 |
| High resolution limit [Å] | 2.800 | 2.800 |
| Rmerge | 0.073 | |
| Number of reflections | 27360 | |
| Completeness [%] | 98.6 | 91.6 |
| Redundancy | 4.1 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 100 mM HEPES, pH 7.0, 100 mM calcium acetate and 10% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
