3QKW
Structure of Streptococcus parasangunini Gtf3 glycosyltransferase
Experimental procedure
Experimental method | SAD |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-04-05 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.033 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 77.217, 99.244, 188.185 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.512 - 2.287 |
R-factor | 0.1901 |
Rwork | 0.187 |
R-free | 0.24980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | A SAD dataset was collected using Se-Met crystal. Initial structure determined in spacegroup C2221 with Gtf3 dimer. |
RMSD bond length | 0.008 |
RMSD bond angle | 1.145 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine: 1.6.1_351)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.512 | 2.180 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.090 | 0.479 |
Number of reflections | 63229 | |
<I/σ(I)> | 16.2 | 10.8 |
Completeness [%] | 98.2 | 96 |
Redundancy | 5.6 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 1 ul of protein solution (15 mg/ml protein and 10mM UDP-Glucose) was mixed with 1 ul of reservoir (0.1M Succinic Acid, 11% Polyethylene glycol 3,350, 10% glycerol), pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |