Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3QDK

Structural insight on mechanism and diverse substrate selection strategy of ribulokinase

Replaces:  3JVP
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X12C
Synchrotron siteNSLS
BeamlineX12C
Temperature [K]100
Detector technologyCCD
Collection date2009-08-27
DetectorADSC QUANTUM 315
Wavelength(s)0.9791
Spacegroup nameP 1 21 1
Unit cell lengths56.683, 88.840, 230.525
Unit cell angles90.00, 92.75, 90.00
Refinement procedure
Resolution48.310 - 2.310
R-factor0.224
Rwork0.224
R-free0.27400
Structure solution methodSAD
RMSD bond length0.009
RMSD bond angle1.500
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareSHELXD
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.350
High resolution limit [Å]2.3102.310
Rmerge0.0650.165
Number of reflections99100
<I/σ(I)>13.44
Completeness [%]98.187.8
Redundancy3.62.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.529830% PEG4K, 0.2M Sodium acetate, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
1VAPOR DIFFUSION, SITTING DROP8.529830% PEG4K, 0.2M Sodium acetate, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon