3QC3
Crystal structure of a D-ribulose-5-phosphate-3-epimerase (NP_954699) from HOMO SAPIENS at 2.20 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-12-03 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.91837,0.97944,0.97894 |
Spacegroup name | P 41 |
Unit cell lengths | 47.665, 47.665, 220.774 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.127 - 2.200 |
R-factor | 0.1667 |
Rwork | 0.164 |
R-free | 0.21120 |
Structure solution method | MAD |
RMSD bond length | 0.016 |
RMSD bond angle | 1.614 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELX |
Refinement software | REFMAC (5.5.0110) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.127 | 2.280 | |
High resolution limit [Å] | 2.200 | 4.720 | 2.200 |
Rmerge | 0.095 | 0.030 | 0.651 |
Number of reflections | 24823 | 4903 | 4849 |
<I/σ(I)> | 8.35 | 23 | 1.6 |
Completeness [%] | 97.6 | 96.9 | 96.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 277 | 0.16M magnesium acetate, 10.0% polyethylene glycol 8000, 20.0% Glycerol, 0.1M sodium cacodylate pH 6.0, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 277K |