3Q1J
Crystal structure of tudor domain 1 of human PHD finger protein 20
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E |
Detector technology | IMAGE PLATE |
Collection date | 2010-10-06 |
Detector | RIGAKU RAXIS |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 60.498, 41.062, 28.632 |
Unit cell angles | 90.00, 110.33, 90.00 |
Refinement procedure
Resolution | 19.080 - 2.350 |
R-factor | 0.2074 |
Rwork | 0.205 |
R-free | 0.26010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdb entries 2rhu 2eqm |
RMSD bond length | 0.010 |
RMSD bond angle | 1.040 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | BUSTER-TNT (BUSTER 2.8.0) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 2.430 |
High resolution limit [Å] | 2.350 | 5.040 | 2.350 |
Rmerge | 0.100 | 0.059 | 0.654 |
Number of reflections | 2828 | ||
<I/σ(I)> | 9.1 | ||
Completeness [%] | 99.8 | 99.3 | 100 |
Redundancy | 3.4 | 3.3 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 25% PEG-3350, 0.2M ammonium acetate, 0.1M bis-tris. Prior to freezing, a cluster of thin rods was transferred to a drop of paratone oil. A fragment of the cluster was frozen in a stream of cold nitrogen., pH 5.5, vapor diffusion, sitting drop, temperature 291K, VAPOR DIFFUSION, SITTING DROP |