3PP8
2.1 Angstrom Crystal Structure of Putative Oxidoreductase (ycdW) from Salmonella typhimurium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-10-21 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 40.495, 139.371, 111.043 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.510 - 2.100 |
R-factor | 0.19865 |
Rwork | 0.197 |
R-free | 0.23508 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3kbo |
RMSD bond length | 0.013 |
RMSD bond angle | 1.396 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | REFMAC (5.5.0102) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.140 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.074 | 0.486 |
Number of reflections | 18836 | |
<I/σ(I)> | 39.3 | 3.8 |
Completeness [%] | 99.9 | 100 |
Redundancy | 6.1 | 6.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 295 | Protein solution: 0.3M Sodium chloride, 10mM HEPES (pH 7.5). Screen solution: 0.2M Sodium acetate, 0.1M Bis-Tris (pH 6.5), 0.01M Glycolic acid, 30% PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 295K |