3PJG
Crystal structure of UDP-glucose dehydrogenase from Klebsiella pneumoniae complexed with product UDP-glucuronic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13B1 |
Synchrotron site | NSRRC |
Beamline | BL13B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-07-30 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0000 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 133.403, 133.403, 187.279 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.000 - 2.700 |
R-factor | 0.1873 |
Rwork | 0.185 |
R-free | 0.22570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3pid |
RMSD bond length | 0.020 |
RMSD bond angle | 2.059 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.800 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.081 | 0.457 |
Number of reflections | 27652 | |
<I/σ(I)> | 35.7 | 7.8 |
Completeness [%] | 99.9 | 100 |
Redundancy | 14.9 | 15.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 11 | 283 | 20mM CAPS buffer (pH 11.0), 6% (w/v) PEG 8000, 16% (w/v) ethyleneglycol, 4mM UDP-glucuronic acid, VAPOR DIFFUSION, SITTING DROP, temperature 283K |