3OG9
Structure of YahD with Malic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-03-09 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.640, 79.070, 130.030 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.530 - 1.880 |
R-factor | 0.17216 |
Rwork | 0.169 |
R-free | 0.22422 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB CODE 2hli |
RMSD bond length | 0.015 |
RMSD bond angle | 1.458 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.3.0040) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 1.930 |
High resolution limit [Å] | 1.880 | 1.880 |
Rmerge | 0.139 | 0.691 |
Number of reflections | 34965 | |
<I/σ(I)> | 0.159 | 3.9 |
Completeness [%] | 100.0 | 100 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 291 | 37.5% PEG 3350, 150mM DL-Malic acid pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K |